Publications

Most of my publications should be indexed in my Google Scholar profile, and I will try to keep the most recent version of my publications here as well.

Journal Articles

Press, W. H., and Hawkins, J. A. (2018). An Indel-Resistant Error-Correcting Code for DNA-Based Information Storage. [preprint]
Hawkins, J. A., Jones, S. K., Finkelstein, I. J., and Press, W. H. (2018). Indel-correcting DNA barcodes for high-throughput sequencing. Proceedings of the National Academy of Sciences, 201802640. [press release] [preprint] [doi] [code]
Hawkins, J. A.*, Jung, C.*, Jones, S. K.*, Xiao, Y., Rybarski, J. R., Dillard, K. E., Hussmann, J., Saifuddin, F. A., Savran, C. A., Ellington, A. D., Ke, A., Press, W. H., Finkelstein, I. J. (2017). Massively parallel biophysical analysis of CRISPR-Cas complexes on next generation sequencing chips. Cell, 170(1), 35-47.[press release] [doi] [code]
Hawkins, J. A., Rittenhouse, J. L., Soper, L. M., & Rittenhouse, R. C. (2008). Use of the Primitive Unit Cell in Understanding Subtle Features of the Cubic Closest-Packed Structure. Journal of Chemical Education, 85(1), 90-92. [doi]
Hawkins, J. A., Kaczmarek, M. E., Press, W. H., Sawyer, S. L. A meta-analysis of bat phylogenetics based on whole genomes and transcriptomes of 18 species. (In review)
Kuo, Y. A., Jung, C., Chen, Y. A., Rybarski, J. R., Nguyen, T. D., Chen, Y. A., Kuo, H. C., Zhao, O. S., Madrid, V. A., Chen, Y. I., Liu, Y. L., Hawkins, J. A., Petty, J. T., Finkelstein, I. J., Yeh, H. C. (2019). High-throughput activator sequence selection for silver nanocluster beacons. Reporters, Markers, Dyes, Nanoparticles, and Molecular Probes for Biomedical Applications XI (Vol. 10893, p. 108930G). International Society for Optics and Photonics. [doi]
Stabell, A. C., Hawkins, J. A., Gao, X., David, M., Press, W. H., & Sawyer, S. L. (2016). Non-human primate schlafen11 inhibits production of both host and viral proteins. PLoS pathogens, 12(12), e1006066. [doi]
Ng, M., Ndungo, E., Kaczmarek, M. E., Herbert, A. S., Binger, T., Kuehne, A. I., Jangra, R. K., Hawkins, J. A., Gifford, R. J., Biswas, R., Demogines, A., James, R. M., Yu, M., Brummelkamp, T. R., Drosten, C., Wang, L., Kuhn, J. H., Müller, M. A., Dye, J. M., Sawyer, S. L., Chandran, K. (2015). Filovirus receptor NPC1 contributes to species-specific patterns of ebolavirus susceptibility in bats. Elife, 4, e11785. [doi]

Patents

Hawkins, J. A., Press, W. H., Finkelstein, I. J., (2018). Error-correcting DNA Barcodes. US Patent Application No. 62/660,531. Patent pending.
Finkelstein, I., Hawkins, J. A., Jung, C., Jones Jr., S. K., Rybarski, J., Saifuddin, F. A., Savran, C., Ellington, A. D., Press, W. H., (2018). Chip Hybridized Association-Mapping Platform and Methods of Use. US Patent Application No. 62/519,502. Patent pending.