Publications

Most of my publications should be indexed in my Google Scholar profile, and I will try to keep the most recent version of my publications here as well.

Journal Articles

Hawkins, J. A., Kaczmarek, M. E., Müller, M. A., Drosten, C., Press, W. H., & Sawyer, S. L. (2019). A metaanalysis of bat phylogenetics and positive selection based on genomes and transcriptomes from 18 species. Proceedings of the National Academy of Sciences, 116(23), 11351-11360. [press release] [doi] [code]
Press, W. H., and Hawkins, J. A. (2018). An Indel-Resistant Error-Correcting Code for DNA-Based Information Storage. [preprint]
Hawkins, J. A., Jones, S. K., Finkelstein, I. J., and Press, W. H. (2018). Indel-correcting DNA barcodes for high-throughput sequencing. Proceedings of the National Academy of Sciences, 201802640. [press release] [preprint] [doi] [code]
Hawkins, J. A.*, Jung, C.*, Jones, S. K.*, Xiao, Y., Rybarski, J. R., Dillard, K. E., Hussmann, J., Saifuddin, F. A., Savran, C. A., Ellington, A. D., Ke, A., Press, W. H., Finkelstein, I. J. (2017). Massively parallel biophysical analysis of CRISPR-Cas complexes on next generation sequencing chips. Cell, 170(1), 35-47.[press release] [doi] [code]
Hawkins, J. A., Rittenhouse, J. L., Soper, L. M., & Rittenhouse, R. C. (2008). Use of the Primitive Unit Cell in Understanding Subtle Features of the Cubic Closest-Packed Structure. Journal of Chemical Education, 85(1), 90-92. [doi]
Kuo, Y. A., Jung, C., Chen, Y. A., Rybarski, J. R., Nguyen, T. D., Chen, Y. A., Kuo, H. C., Zhao, O. S., Madrid, V. A., Chen, Y. I., Liu, Y. L., Hawkins, J. A., Petty, J. T., Finkelstein, I. J., Yeh, H. C. (2019). High-throughput activator sequence selection for silver nanocluster beacons. Reporters, Markers, Dyes, Nanoparticles, and Molecular Probes for Biomedical Applications XI (Vol. 10893, p. 108930G). International Society for Optics and Photonics. [doi]
Stabell, A. C., Hawkins, J. A., Gao, X., David, M., Press, W. H., & Sawyer, S. L. (2016). Non-human primate schlafen11 inhibits production of both host and viral proteins. PLoS pathogens, 12(12), e1006066. [doi]
Ng, M., Ndungo, E., Kaczmarek, M. E., Herbert, A. S., Binger, T., Kuehne, A. I., Jangra, R. K., Hawkins, J. A., Gifford, R. J., Biswas, R., Demogines, A., James, R. M., Yu, M., Brummelkamp, T. R., Drosten, C., Wang, L., Kuhn, J. H., Müller, M. A., Dye, J. M., Sawyer, S. L., Chandran, K. (2015). Filovirus receptor NPC1 contributes to species-specific patterns of ebolavirus susceptibility in bats. Elife, 4, e11785. [doi]

Patents

Hawkins, J. A., Press, W. H., Finkelstein, I. J., (2018). Error-correcting DNA Barcodes. US Patent Application No. 62/660,531. Patent pending.
Finkelstein, I., Hawkins, J. A., Jung, C., Jones Jr., S. K., Rybarski, J., Saifuddin, F. A., Savran, C., Ellington, A. D., Press, W. H., (2018). Chip Hybridized Association-Mapping Platform and Methods of Use. US Patent Application No. 62/519,502. Patent pending.